NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1024469

Scaffold Ga0208919_1024469


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1024469 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2233
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010950Metagenome297Y
F018286Metagenome236Y
F070089Metagenome123Y
F101902Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10244692F010950GGAGMMKIWVVRQTCTYDNETFVTSHLTEKGALIEAIKTVRGDLCDGYDDDELEDMRPDMPHNYQEDLMQYGSEQLRGIIEDWWEYAWQINEAAAYQIYETQVMA
Ga0208919_10244693F018286AGGMKVLTTFILVGMVDSHDAHFATVELSTTPASNGGPAVAVMPVAAFPCEIYEGKVFYVVKLHEEEDAVIVCQKEPEDEPRRGKTD
Ga0208919_10244696F070089GGAGGVKVGDLVRFESALNDDMDRYTVEHGLVVQISKTGHDTISAQILFNDGELWWVDSGRLAVVSEAG
Ga0208919_10244699F101902GAGGMRVGNLVKRRDDHAHHGIVVEVGPQETAIDHGSTVAKVQWNDGDLTCEFIKMLEVLSEGR
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