NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1026332

Scaffold Ga0209634_1026332


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1026332 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3146
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F013705Metagenome269N
F097661Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10263324F001702N/AMNKEQKQIKKRIDQAYSKLHVLSNITWTPYRDEIFDMNKKDEKRHRFNRPSSDFEASINDCAKMFTVKNIAESLLNIEKWKVKDLINIRKSALYSQSVVENYKDKIVEAWKDEDLKYLADLDYIALINWQSYTEKEQRKVA
Ga0209634_10263326F013705N/AMTNKLQNKIDELIKLEELHNIKEQYRQHQKTKSLYEQIDFKPIPQEIMDNANTDWETND
Ga0209634_10263329F097661N/AMTNKKDVLKYIQITKENLEESCDGNYFSDDVAVKYDLQNGEINVVAYCICKATANGMAKGLNLYNNLKEEL
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