NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1107286

Scaffold Ga0209634_1107286


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1107286 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F017556Metagenome / Metatranscriptome240Y
F089527Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_11072861F017556N/AMSYAKFKEGQVVSFPSAGTVGNRARKGGTITVVEKMYELKEDKKYFYPNGKCRGELTTIKELSNGEFKGYAYKCKTIQPNGFTAEIVMVEEFKLKATTKKKVLNSYTIYA
Ga0209634_11072862F089527N/AMANMNKKSRQGKTPQQYRDSSRFAWYGVVGMVLLLILTSLLMGCATTQPTKKCCEKIHVITEWDGNRQINWYSSTKEK
Ga0209634_11072864F004162N/AMGKTQKVATLLGERQKIEKEIEKIQNSCQHLIKSIKNVRERLDSTTIVTRYVCDECSLIIGIPNNDELQNFLKQ
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