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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025345 Open in IMG/M |
| Scaffold ID | Ga0209669_100028 Open in IMG/M |
| Source Dataset Name | Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 91010 |
| Total Scaffold Genes | 108 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 97 (89.81%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F063403 | Metagenome / Metatranscriptome | 129 | N |
| F069506 | Metagenome | 124 | N |
| F080678 | Metagenome | 115 | N |
| F084856 | Metagenome / Metatranscriptome | 112 | N |
| F086364 | Metagenome | 111 | N |
| F092976 | Metagenome | 106 | Y |
| F100012 | Metagenome | 103 | N |
| F104114 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209669_10002814 | F063403 | AGGAGG | MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ |
| Ga0209669_10002826 | F084856 | N/A | MERGDAMFDLSNLMIVTHLYTKEHAEALSLTLSEWRKSAPSSQIIVGYYQSRFQPSDFSNLMQDDAVQFVPVSNSSYGAAYNTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPIIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSSNCNPVRYVKPETQTDRKSSKPYGRR |
| Ga0209669_10002857 | F092976 | GGAGG | MTVQEILHWKQELRRVMQEFLQVWQKCPKCGAKWADIAWDAESDHESLLVECRSGHLFRVDEQFWLFDYDDTGVYAPSETAMAEVSAHAG |
| Ga0209669_10002862 | F080678 | GGAGG | MFAKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI |
| Ga0209669_10002865 | F100012 | AGGAGG | MDREKVLQALKEAQAEYDIKDLDRFVRTAWEEGDALQAQFVAEMIERAVEILFERHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVMRLVELIEQNLKSRAVE |
| Ga0209669_10002866 | F069506 | GGAGG | MELEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGSPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA |
| Ga0209669_10002867 | F086364 | AGGAGG | MEREEIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDPLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQRA |
| Ga0209669_10002871 | F104114 | AGGAGG | MERLRLWLSLTQDEKFAAAERELKNAILDIHEDFEEEWSLSRSVEDFAPDGLAEIVIQTVEALLGLQWRLEWDYGADADDMVLSSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |