NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209778_106655

Scaffold Ga0209778_106655


Overview

Basic Information
Taxon OID3300025350 Open in IMG/M
Scaffold IDGa0209778_106655 Open in IMG/M
Source Dataset NameArchaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1938
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021443Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209778_1066551F021443N/AMRYLLNDEKLTFTFTSSYVECHNYVYGYYQINEILSFAVLDLVLKIINQQKRKSITLKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRPLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNLNLATMLMHILEKERIDMIDGNGIIFYCVFLM
Ga0209778_1066552F021443N/AMKCMLKNEKLIFKFACPYPSYVTCYNDNYYQINEILSFAVIDLAFKIINQQKRKSIILKKRKPIIHLLNYIDILNFNSNKFEITFPLENKYKTLLTLNLFLYRSSHQERYYNDLYKNNLKVIERENLCIIELKYDYASRIQPKNVNLVTMLIHILEKKKIYMDLNGIIFYCVFLM
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