NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1000198

Scaffold Ga0208383_1000198


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1000198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11844
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030373Metagenome / Metatranscriptome185Y
F058576Metagenome / Metatranscriptome134Y
F099158Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208383_100019812F099158AGCAGGMILDDLKHIFQPQIDEGTTKLYFMLIDDDHKVIERHPASDLESLVPMLDNFQYHGTEARIPRFVK
Ga0208383_100019814F058576N/AMKLFARSGGHWLFWSGVFYISLALSVAFSPYGQYTWYTQIVWLLLVSLPLVCNPLARWLNMKENNMFDMFKKKPSNVVPFPKEPEHGGGDGGGYTPEPKKPAVTYYTLGMNSDNRLEFKMGYSAITMNYGGVTHMIEQLQLYQKQLAQYEGIEEEENA
Ga0208383_100019817F030373N/AMYNEIELMEMARDYEAMERVALQDAEELRQLRNGERIIVPVDIEHARTMFKLSSFYLSQHDKEFTLTMEM
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