Scaffold Ga0209143

Basic Information
Taxon OID	3300025373 Open in IMG/M
Scaffold ID	Ga0209143_1000976 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025373 Open in IMG/M

Scaffold ID

Ga0209143_1000976 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13575
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (96.15%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13575

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (96.15%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209143_100097611	F100012	AGGAGG	MDREKVLQALKKAQGEYDIKDLDRFVREAWEEGDVLYAEIVAELTERAIEILFDQHFLWVHIVESEDFEEWIPDGWYSFVAVHPETGQCLTFLKDPVHSGKSRSSFRARIRSADDAVDAVTRLAELIEQNLKSRAVE
Ga0209143_100097612	F069506	GGAGG	MQLEQSTYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIVVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIIRLVIKLLNQIQPELVTA
Ga0209143_100097613	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVEALTDRNFGWHEDALKDEWSYTGEFSFICVDPETFKCLTAERSNSSCTVSVVFPILSIDDAVQVVEYFLQLVQQA
Ga0209143_100097616	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAEKELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDFDADVEDMFLSKGTTTYWFRVFDPETGCILTRNPNGIPGERFRYCKFIETLGDAVQAAVDLADIIAENLPVVRSQVSSREVK
Ga0209143_10009763	F092976	GGAGG	MTVQEILHWKQELRRVLQEFLQVWQKCPKCGAKWADISWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDSGVYVPSEETAMTEVSGYAG
Ga0209143_10009768	F088087	GGTGG	MKASDGSVWLPVTVSSAPCEICKRKSKSVVYECVEGKWVGVRVVACPEHAEKAIEQFIAGGDE
Ga0209143_10009769	F080678	GGAGG	MFVRKVDAKTPIEEVYDNWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSYNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209143_1000976

Overview

Ecosystem & Geography

Associated Families

Sequences