Scaffold Ga0209143

Basic Information
Taxon OID	3300025373 Open in IMG/M
Scaffold ID	Ga0209143_1002214 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025373 Open in IMG/M

Scaffold ID

Ga0209143_1002214 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8500
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8500

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209143_100221411	F104114	AGGAGG	MERLRLWLSMTQDEKFAAAERELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDFDADVEDMFLSKGTTTYWFRVFDPETGCILTRKPKGIPGERFRYCKFIETLGDAVQAAVDLADIIAENLPVVRSQVSSREVK
Ga0209143_10022142	F088087	AGGTGG	MKASDGSVWLPVTESSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFIAGGDA
Ga0209143_10022143	F080678	GGAGG	MFVRKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRSVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209143_10022145	F100012	AGGAGG	MDREKVLQALREAQAEYDIKNLDRLVREAWEEGDVLYAEIVVELTERAVEILFDQNFIWVHIIESEDCEEWIPDGWYSFVVVHPETGQCLTFLKDPVHSGKSRASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE
Ga0209143_10022146	F069506	GGAGG	MQLTHTEERIKQAIEEVWQELLQEADAENYSLEEYFEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVIDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALAAA
Ga0209143_10022147	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFAKFRDPDFPVYWIPYTIEEAVELLTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209143_1002214

Overview

Ecosystem & Geography

Associated Families

Sequences