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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025440 Open in IMG/M |
| Scaffold ID | Ga0209741_1000657 Open in IMG/M |
| Source Dataset Name | Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9335 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (95.83%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Octopus Spring, Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F069506 | Metagenome | 124 | N |
| F080678 | Metagenome | 115 | N |
| F088087 | Metagenome | 109 | N |
| F092976 | Metagenome | 106 | Y |
| F100012 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209741_100065711 | F092976 | GGAGG | MMQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDTGVYTPSETAMAEVSAHAG |
| Ga0209741_100065715 | F088087 | AGGTGG | MKASDGSVWLPVTVSSAPCEIYRRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEKFINGGDE |
| Ga0209741_100065716 | F080678 | GGAGG | MFVKKVDAKTTPISEVYDDWERIWMDEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI |
| Ga0209741_100065718 | F100012 | AGGAGG | MDREKVLQALREAQAEYDIKDLDRLVRDAWEEGDVLYAEIVVELIERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFFNDPVYRRRSASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE |
| Ga0209741_100065719 | F069506 | GGAGG | MQLEQLTYTEEQIKQAIEETWRELLQEVDAEYYSLEEYLEHYRKYWDDPDFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVTRLLNQIQSALTTE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |