NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208248_1000995

Scaffold Ga0208248_1000995


Overview

Basic Information
Taxon OID3300025595 Open in IMG/M
Scaffold IDGa0208248_1000995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8008
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F061661Metagenome131Y
F088507Metagenome / Metatranscriptome109Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208248_10009956F061661AGGAGMRYREHYTIQPVTRKWAEIVLAMAIGLGLATLFFFGA
Ga0208248_10009957F103126GGAGMSEQMQMQIDEVVEELSPIPGQIGILTAHELRSHLRMAVTKGSLIGWVGAERLTSARYKQDYDNLVQHCKQLELEIMELKR
Ga0208248_10009958F006696GGAGMKFIKFLKDYYRDLTPAEVIARELAQAHLDRLEAESASEYAKACHDLSMARIERLNTRLKEYK
Ga0208248_10009959F088507AGGAMTECCNDFGNCTQGRDCPIRKQRAQEANEAFMNRNNGLEPDLIDDLAASVKGLIALMFVVAGLTMIAFAFWGK
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