NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1000772

Scaffold Ga0209716_1000772


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1000772 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27633
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (80.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082526Metagenome113N
F096901Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100077216F096901GGAGMWTLWIVSTVIGSAEPKVTHYAEFETAMSCHIEQAVLETMFENNEVAYCDYE
Ga0209716_10007722F082526AGGMKINEVTEEVIPVNNTEHAVERLKVAAELCSKMGNQPILYRAMHGGEYHGGAKNNLIQKITNPARKGVMGNFNPIQVAVLKGLNIASPAQATTVAPASNSNYFGTNHIIIPGGDVKAYWNPDIDDLGGFEGYDPQYAKGAGPSGGTISRRDEPEGEELEKILGGYQKGIPSYSQHKGEVILDTEFYYMLNLESFLSKFGGKKVKELITIDNRKSFAAIKQDLLVDKFKTYRDVGWYLANPATNMMKWIASKEKERQ
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