NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209360_1128876

Scaffold Ga0209360_1128876


Overview

Basic Information
Taxon OID3300025665 Open in IMG/M
Scaffold IDGa0209360_1128876 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)717
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013703Metagenome / Metatranscriptome269Y
F030559Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0209360_11288761F030559AGGAGMKKLWLIVLLIGLVNAQMPEPTMVGQDELQIPTLTINNFVNQAEIEGLEDTRVFLGITNILTENVMDSRYDLVENESDFELTARVVYLGRPRTSTTILGLFRRESTTTEVRVVVELLNKKTGD
Ga0209360_11288762F013703N/ALSSSVGQISKENFLNMNLMYGYRYPIKMKNNTINLQTFVSYTIFRYYEGLKTENKYLLLESPILIYPGFNIDINFTETFKMNFGFNVGYNTLVNDLGERNINYSIIFGTNF

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