Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1000471 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1000471 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23501
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (50.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

23501

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (50.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F001971	Metagenome / Metatranscriptome	609	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F013172	Metagenome / Metatranscriptome	273	Y
F032098	Metagenome / Metatranscriptome	181	Y
F048268	Metagenome / Metatranscriptome	148	Y
F077003	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_10004713	F077003	GGAG	MVTLLLTATISCADALGIIHRLTKVVGLTPIQKSEIIQEIRKTIPFCPVTIKKDDK
Ga0208162_100047130	F007569	GGAG	MNFTPQQYKLIYTAVRRHQIEKTALNSLEYQECSEILDELFDTVYTQQVEQPT
Ga0208162_100047134	F032098	GGA	MKDDYPYHELDPTTPWYEWLMHCEIHHQLNVSGQPKWQRYAAYRNYLKEVGVL
Ga0208162_100047141	F000345	GGA	MTEKQPNEFGKALQEWWDSDACKELQKSHKESVERAVGKYFMLSEEDKLDMVQAICTIMCKAESEGTSHRGLQDALGIYPSGFWISELMTVHNSLWGYFHVKNQEKKLKDDLDALEDFMKNKEDK
Ga0208162_100047149	F004898	GAGG	MNLTEFIEEIREIEIYGSDPVDWMGYLANDDYWVPDEELVY
Ga0208162_100047157	F013172	N/A	MSYYWTTKLNTATNRRIEKLESEGVKVDTSTHTGRQVIGYNYLELAFDESYETL
Ga0208162_100047158	F048268	N/A	MKLSNSSITQIADALKPAVMNYIYEDEGFTEYMQTAVVEGIKDAMGDMDEDLLFEIGMLIFDRIELK
Ga0208162_100047159	F000744	AGGA	MMTETTVNLNVHEIGVLLSALQNLENVDEIHIARDYGSAPALYNKLYSLWERMDRSQTGLRNDVVPSF
Ga0208162_10004717	F001971	GAGG	METERLTYEEFIHKGTEFYMDMVRLVDTKLKYRMEFTEQETEIKDHIMEFQHQVKLNELRDKFQKCWDKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1000471

Overview

Ecosystem & Geography

Associated Families

Sequences