NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1006222

Scaffold Ga0208899_1006222


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1006222 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7167
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F027524Metagenome194N
F100003Metagenome103N
F103288Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208899_100622211F027524N/AVNETFLKEKRQVIETACKNICKHSDIWQDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLRESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK
Ga0208899_100622212F103288N/AMSIIIISILAILGWTSLFKQTFTTKEGFRYVYQPISKILYTLDFKPLNCAYCLSFWFGLVLTIAFMDITYMVIFLYFAKQD
Ga0208899_100622213F025412N/AMDYRELKWGALKSYATKLGINTKGMTKVALLDCLAAMPEKAHKVEELKPFKGIKQKHPLFEEVKDYLPYLKAYKKLNAISRDPKVNKAIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI
Ga0208899_100622216F100003N/AMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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