NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207705_10872828

Scaffold Ga0207705_10872828


Overview

Basic Information
Taxon OID3300025909 Open in IMG/M
Scaffold IDGa0207705_10872828 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024524Metagenome / Metatranscriptome205Y
F073605Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0207705_108728281F024524N/ALGVTLFESEEAMRRGDEALNAMNPGGTERRTSVEFYEVPVQTVS
Ga0207705_108728282F073605N/AELFDATASRFLDLYWSDRNPSVRPDLDEAFRDMVTFAEGELPEATPAQHEDARHRRWALGSAGYVWRVAESTARTSDLDLRAALEKEVEAVVESFPKAEPEDRFLAWAATECVNRNLLFGSASPGGWASGGEFLRRGFRFAERHVFSEDVTLPLKDQWYAFSFGVALYDVDAFLATRPPRRISRREGQLTV
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