NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207687_10040685

Scaffold Ga0207687_10040685


Overview

Basic Information
Taxon OID3300025927 Open in IMG/M
Scaffold IDGa0207687_10040685 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3188
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004910Metagenome / Metatranscriptome419Y
F005165Metagenome / Metatranscriptome410Y
F043956Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0207687_100406856F005165N/AMSGIISNDGAHPEWRQLCQAALLETNTLKLLERIARARNAVLDRIEDGYSKPPTSEQAALRDALATLDSLRRITERQYGYQSKAS
Ga0207687_100406857F004910GGAGMAISQRLVDPSREFIVSVRYSWQESYHAALLETDWSRMVELVQTAESEIHKRRLELSKDHNGTQEEREAVVNALNGLRVLRMDAAAWRERQNLNRV
Ga0207687_100406858F043956N/AMPPPITERVKKLREEIAELTGKNRAYSCGPKYGSAVADNERRFQRLIEIADELKSLTDWKKP
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