NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207664_10064834

Scaffold Ga0207664_10064834


Overview

Basic Information
Taxon OID3300025929 Open in IMG/M
Scaffold IDGa0207664_10064834 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2923
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000945Metagenome / Metatranscriptome825Y
F055049Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0207664_100648341F055049N/AVFGLYYYLKIANAMFMRHAEKGEETLPISYAMRAALAVTGIATVYIGIMPNRFIELVNWSLGIAQSPNVAKLVH
Ga0207664_100648346F000945N/AELAIAPLDMAPACPWVRQRRYERLVLAKTVTGTIGSSWGKSKILIRELSLGGGMGTKEDGLRIGSEADLEIHVGMRSKIKAHVLLRRARVNEVGFEIVNTDLESRYRLRRLLVEALNCAPQGRSHDWGGDRKI
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