Scaffold Ga0209940_1021426

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209940_1021426

Scaffold Ga0209940_1021426

Overview

Basic Information
Taxon OID	3300026133 Open in IMG/M
Scaffold ID	Ga0209940_1021426 Open in IMG/M
Source Dataset Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D1_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1060
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_54_18	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4972	Long. (^o)	-122.1293	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070131	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209940_10214262	F070131	AGGAGG	MMGKMLTKISIIGVLAFCFLMQVDLAGGDNRIYGQNKKKSNVPMEIELHFSSTPLLNEYTVLNVEIRSLKDAPNTLIDIKLPSDGFKLISGDTQLNEDLSSGSTTIYQIEVLPAALGQYKISASAISGETDYIFGKREELYVNIGEEFSELSKSSFIPEIADNRSEATKIGNISEPPAEVLSDQKPKEGQDILYFAAPGKGQIAVRGSWVYQDKTGNDRPLRDAMVEIWDADSSGDTLLDTTFTDNSGYYISDNISNSDEEGGGQDIYVKVYSTDNRSVRVTDF

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