NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000103

Scaffold Ga0209235_1000103


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000103 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36060
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019111Metagenome231Y
F039071Metagenome164Y
F073377Metagenome / Metatranscriptome120Y
F088665Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100010313F088665N/ALLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR
Ga0209235_100010316F019111GGAGLGEQGERDENDLRSGIIDQLEQSLTMSQGMMTNLKLDPKTRERWTQLHTNTAQVLNQVLRDKQYRDWEKRLKELEAAERIPRKTVWSRDTSSEDNGRSVSL
Ga0209235_100010317F039071GGCGGLGIGQRDELLANIRQLSRIVLDRLEQGSKEGTLDQAQIRLLGSIAMKSLGLWQEALNPRPRRGLRKEVRDIEDGISDENAGRSSG
Ga0209235_10001039F073377GGAVRRMALFGTVMALVLTLAVVAPVFGAPPAGIPPSHQAQGHHRAPLLATGTTLTISGSGTAYKIGNRTITEGASVSLTATVVKSSPGRAMLNFTGGTLTIGSDTYTVVSGHGVINHAHKMILHIVVKNSAGATFRLILHGDHAKPSSTTAFNVDFRMPQSKLTHLWFLNFP
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