NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1054148

Scaffold Ga0209237_1054148


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1054148 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1993
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009133Metagenome322Y
F091718Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10541481F091718N/AFTIAALVIFTLGLVVSAIVLKFGTQLATSLGDAYKSYRSYTPIIAWLFQMIALVILYNVSKPITASYFASIPWAYPLIFLMIAIGPTIKVVMNTVNALEGKNTSKHLLTN
Ga0209237_10541482F009133GAGMSSNIEQLLSKNLEDLYEELGRSLIAPEFPKTATVTRQNAVQRGRSFVSGSFEKLRAKICIDWRYCSKKGEYGDFQSLAYAVAPLVSSVVGVSATTALIVSIILIKSGLEKLCNCP
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Institute for Fundamental Biomedical Research
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