NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209723_1025179

Scaffold Ga0209723_1025179


Overview

Basic Information
Taxon OID3300026311 Open in IMG/M
Scaffold IDGa0209723_1025179 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3557
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209723_10251794F065813N/AMTPLISFFGWFDIIVVTPFVLYFGYKGVKWIIGKLKKQPQEGEIETPDVES
Ga0209723_10251795F073596N/AMNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKSISTNYRTAYFKEKAKNFNK
Ga0209723_10251796F095525N/AMKALTDIGLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK

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