NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209154_1001762

Scaffold Ga0209154_1001762


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1001762 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12479
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017117Metagenome / Metatranscriptome242Y
F091702Metagenome107N
F104897Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10017622F017117GGALVDISDPIVWSTVVQTVVLTLTLVIFIFTFRSQNQAIKEQAYGKVLDDYGSAMRMLVETPELYAFQQDLFNASQGRLGREQKSYTREEMTIRNYVIMLYGFFERVYFLYRRKWIDEETWKQWAAFLELFSLHPVFRDVHLSSGEMWDKPFVDYVASLLNRKT
Ga0209154_10017625F091702GGAGGLNASRSPDIRILRKPSAPPCDFCGEDFEDGEDAYRLAKGKVHFSVPSFVPETASIFFHEECWRKVALQRRKGEAKQPRPETET
Ga0209154_10017628F104897GGAGMFLLSLVFLAAVLAVLGVIFQDNWAKGGVGAAIIIAILLYWSITKEKKSLTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.