NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1007205

Scaffold Ga0209647_1007205


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1007205 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7850
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022093Metagenome / Metatranscriptome216Y
F079016Metagenome / Metatranscriptome116Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209647_100720510F079016N/AMKPGEIDSDKTNDRVQELWGELTGIDDRTDQERTFTIYKRSGSLLVISDTGCERLVGPDQGLSKTRIFQEVMYQFRVHAVRPKPSFYPLSD
Ga0209647_100720511F087658N/AMPEALYFQITLEPHLKHSGLATGRKILFLAEVSVTTAKEASEIPEDDGKVYETAERLAANLTCMAMTGAGSQPGEDEMQISFQSISGMSADLRQRRPDAEKDGVRIWLLGAPPE
Ga0209647_10072057F022093GAGGMPTLMRVEFSRGLRPDSPRFVLMIEIPDSAAAELNARKISLETRAYEVALETTNADRSNKPEHHMSLTSCTRGKVKNLESLGEPSLLAPDACRAWVIKRPSPLQELLDKGWQSRQKNPGSKG
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