NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1001746

Scaffold Ga0209470_1001746


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1001746 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15827
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066655Metagenome126N
F099065Metagenome103N
F102958Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_100174611F099065N/AMKRPRKREEKEKSTAKTPKTMDVADAGRLYSLDTRVKKTP
Ga0209470_10017462F102958GGTGGLLPLPTRAQSASSVFQTDLVTEKSSCKINEMVYAKLVLYNPTAQRMAVHFSGGCWFSFVVRDMLGTVIHNETWPACDPDINGYENTTNVMLVDPGGGRWFPMTWNQLDGLGKHVPVPADYVLSWSFKNPDLPIPEASKTITLTDQVQSQLEAFSASAFRFLQDFPPVVWFVGFVGTIPWSRALQRTKTSARLMMFVPAALLGIAILILILGFYSNQLLCLAIQCPGTISLLNSMNVYLLITPIIWGILFLTGKMAPEKLMWLPLVIFESWTFSPLIIAFSVLNSAQELWRNTFYYDPAIVWPAYAVILANIPAQLIFYRAFKKKLLSTEPFVPVVPKPPW
Ga0209470_10017463F066655GGCGGMITMPVISREFWLGPLGIPLAELMLPEYLKGKLSPDEWRILIEMHLLRLKVFNSGRMSRLLGLMALVILGAFAALLIVFYIFVGRPWGPILVFPAWSVPILLSLLWVRRSLRTWEFELDGNAASQFGTEQVTLVLEKMQGLDPRATLSSFADRFWAFWSPSISKRMEELRDQRFVGPPRPSRMPKIGLRGRAIIIVIGIAIFWGSGVIAGNLYARGQETVACVTNTCAALVVIAAVGYWSAILGALSMVPVVVRRVRQARRKKKYES
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Institute for Fundamental Biomedical Research
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