Scaffold Ga0209152

Basic Information
Taxon OID	3300026325 Open in IMG/M
Scaffold ID	Ga0209152_10000342 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026325 Open in IMG/M

Scaffold ID

Ga0209152_10000342 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22647
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (45.45%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22647

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (45.45%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F021496	Metagenome	218	N
F023077	Metagenome	211	N
F041118	Metagenome	160	N
F048885	Metagenome / Metatranscriptome	147	N
F099704	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000034217	F041118	GAGG	MTRLSFELVDPNSGEGASAEAVVDEKLIEDLNSYRSQGSRGKAFLIWIDTLKGEVSWQLRKIPDPFE
Ga0209152_1000034219	F023077	N/A	MTTTIALLVFPVHSATMNPEENVNLYTGNRLMIDSNQPSIKSVVVRGNLTGATLSNNAYPAKNFTLTTNSTQLYTVDLLLSYQAPYTTEIVISDPSSGSKTQYTSYFVSGGDLNLTVFASFQAAPSTGPSTPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLIAGFAISLAVMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209152_1000034220	F014723	GGA	MFAAICVALELLFFYNALNTGVVDKTVSIPIGSWSLPISIALFLSLGNALFMVTLWMNVFESTAYVRAGPDKQVRRILYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNSVVSIQAFKQTTESFYNWAFNVSQIDGATRFIISQMLATLGALFIAGLQLWRVKGTKNLVRAFQRRK
Ga0209152_1000034221	F010022	N/A	MRKNILVAGVTLLALALLFGASYPTGLLFSIPISILNIIFGLVTRTSPGFESRPESANIRLVIDRGVVRASIYQLVFLNSKLILKRLSSMMVTVIPAFVLALLGLEVLWIVGALMGGITGFSLQEFLTQRMRNRMRSEMQLTSVGKSDIDISYDDLLEVRLVKSRLYLITETSSLSASFPRGYSRKIQPMLVNIFESKFTTEESVRAAEAAEKENEKGEHPRGDRGKLSCR
Ga0209152_1000034222	F099704	GGA	MPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209152_100003426	F021496	AGG	MAHPSRVKSKIAGGIPHMPFQEFTANSLEQLLAELKDAKILDARIEVSASEDGRHYACSKPLVNVLVYTSHSLGEEQEYKDLLALYQYCPDCKNAVRVL
Ga0209152_100003429	F048885	N/A	MRLLAECPSCGASFIMDTVTEKRPRVEASDPNQHIIWDWKAEKWIPAKRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209152_10000342

Overview

Ecosystem & Geography

Associated Families

Sequences