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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026328 Open in IMG/M |
| Scaffold ID | Ga0209802_1004948 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8643 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010022 | Metagenome | 309 | Y |
| F014723 | Metagenome | 260 | N |
| F023077 | Metagenome | 211 | N |
| F071058 | Metagenome | 122 | N |
| F099704 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209802_100494810 | F071058 | GAG | MTKLPMTTRIGVRRIVIEVNRDLTVEQIEMLDETLKKLGLIKATKVTLHDQQPHRVRLQRAAQPSKLPFENNQHNVPPDVKGAQSAST |
| Ga0209802_10049484 | F023077 | GGA | LKKRIGVLAVLMITAMALLASPVYSATMNPQENVNLYTGNKLIIDSNQQSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSTGSNSQYTSYFVSGGDLNLTIFASFQAAPSTGPSTPLGWASFYGWISQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAIMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED |
| Ga0209802_10049485 | F014723 | GGA | LSEQYHRLFLRWEVLRGWVPAIIFAAVCVGLELLFFYDALNTGFVDKTVSIPIGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMVKTAALVLAPFTIILFVPYIVEANWFVNAVASIQAFKQTTESFYNWAFTVSQIDGATRFIISQMLAALGALTIAGLQLWRVKGTKNLVRAFQRRK |
| Ga0209802_10049487 | F010022 | N/A | LLAVALLFGVSYPEGLFFSIPMSILNIILGLVTRTPPGLEIQPESANVRLVIDRGVVRASIYQLVFLNSKLILKRLSSVTVTVILAFVLAVVGLEVLGIVGALMGGITGFSLQEFLTQRMRNKIGSERQLTSIGESDIEIEYDDLAEVRLVKSRLYLITHSNSLSASFPRGYSGKIEPMLANIFESKFTTEESVRATEAAEKENEKSQHPRGDRGKLPRR |
| Ga0209802_10049488 | F099704 | N/A | MPEQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |