NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257150_1000665

Scaffold Ga0257150_1000665


Overview

Basic Information
Taxon OID3300026356 Open in IMG/M
Scaffold IDGa0257150_1000665 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4513
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037073Metagenome168Y
F041462Metagenome160Y
F100458Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0257150_10006653F041462GAGGMRDGGNSTAMTKEELIEAACEIIGGNLKDLSADQVQKLTTIAQHLADLSLKDHRSFGNLCAIRTTIDTAVTAGEATDDLVTVGLTKEQCAFLLALVDREIREHA
Ga0257150_10006657F100458GAGMIDSRTLKTQTRYSLKLHDVRKAAAAYELMHSAAALLQMLPVPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITGIVPHPDEDEKKS
Ga0257150_10006658F037073GGAGGMRQLRKLINDPNHWRSRSKEMRSTAEKTADRKVKATMMVTADAYDRIAKETESRMTEKSQLSR
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