NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257165_1059065

Scaffold Ga0257165_1059065


Overview

Basic Information
Taxon OID3300026507 Open in IMG/M
Scaffold IDGa0257165_1059065 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)694
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046931Metagenome150Y
F091691Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0257165_10590651F046931AGAAGGMRKPSLTTSAISILSFILGAWLLFDGTRKLVTGYYTGEQTIGLGPWATIVTAIGVQPADMAFPFLFLGVIWIVNGIIVLLGANNRYERAIAISIVTLFYALPGTLVGAVTILLSLRERKLLGRAG
Ga0257165_10590652F091691AGGAGGLSMSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFR

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