NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1032218

Scaffold Ga0209809_1032218


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1032218 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F081390Metagenome / Metatranscriptome114Y
F093914Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10322182F081390N/AMLRRNRLIPPFRAQRRKMLRDAPERLTVKRVRRAVVDVPT
Ga0209809_10322183F004791AGGAGGMDKPAEIYDIDTIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAALLLKKIFDSIGDEGNE
Ga0209809_10322184F093914N/ATVTIGKREPVELTLTFLYNEDTGSAANTIFNRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITSVTLSALDPSDAEPYVAMVTVRTPSIRQYTLGSSPTNLNPAS
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