NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209376_1191271

Scaffold Ga0209376_1191271


Overview

Basic Information
Taxon OID3300026540 Open in IMG/M
Scaffold IDGa0209376_1191271 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043315Metagenome / Metatranscriptome156Y
F103008Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209376_11912711F103008AGGAGGMRWFLVLSCAFLLSSESAAQAPSRWTLSAGPEWTPSPSNSRFYGGRLRAEYDLLTPTSPFRLRLDAGTFWSPTQSYYGSYVDGSSVFGFDQTVDLTFGLSAAVAPLPRARFSPYVMLGLYARQSWSHGANSFRNPDGSLAWNLPENSRTYGDILAQTGIGLRARIGDRMFQLEMRQFSRRSVTLGTNLPF
Ga0209376_11912712F043315GGAVPNKRLKLPGPAFRGDVRLCANELVPQGGVLASAG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.