Scaffold Ga0209648_10016838

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209648_10016838

Scaffold Ga0209648_10016838

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10016838 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6377
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077634	Metagenome	117	N
F097961	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100168385	F077634	AGGCGG	MPFTKRELWLLNLYRNSELHGALLMGRLARSVTSPDVLVGATRHCATEAHHAALLTEVIAKLGGAIDPSTETIQMHYSQDGGIPKEMVDLLVLSEILEARVLMSYREHLQRSDVHPNVRRTLQRIIQDEEAHSGEHGWAEQLIAGMPPDQVAATRAKWRDIDEKVAAQLRSRLASDFPEEGAHREC
Ga0209648_100168389	F097961	AGG	MIRLRFLHPGRHVWRVWRRRDDALEERWVSFRRVLPNWEKIFSSTLDLIWLPNTPRPGRIQLSDERGFITWHEERWMTRITLRLAGFSAAKQSLVAATLLKAARFHLLEEE

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