Basic Information | |
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Taxon OID | 3300026551 Open in IMG/M |
Scaffold ID | Ga0209648_10091290 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2517 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010303 | Metagenome / Metatranscriptome | 305 | Y |
F025219 | Metagenome | 202 | Y |
F082199 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209648_100912901 | F025219 | GGAG | MNKTALAIIVCSMFALPANADTISGGKITSVDAGGTSFHYSKKKKHWTFRITDKTVIRVGNRTGTLSDLKSGQPVKVEYQRQGDAFAALIIVGIGF |
Ga0209648_100912903 | F010303 | AGGAGG | MSDALNRVERCRDLAEECRNVAAMCGSTEMGNHYRRMAEHYTTLAEAEDLGTLAYGH |
Ga0209648_100912905 | F082199 | AGGA | MSNLETYREKARECARAADEVHNSGERVELLGLASVYMALADYVDREHRHDTVFRDDQDQDMQKAS |
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