NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10161080

Scaffold Ga0209648_10161080


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10161080 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1759
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009891Metagenome / Metatranscriptome311Y
F087672Metagenome110Y
F099398Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101610801F087672AGGAMAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS
Ga0209648_101610803F009891AGGAGGMSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKIVLWRDKHFMNWRKQQQQTARKDVPISSTQKSQARA
Ga0209648_101610804F099398AGGMMQKIINSKNLVAFVLAAATGMTLYFRVPFPETNTFLLVMALRSPSAFEA

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