NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_102124

Scaffold Ga0208313_102124


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_102124 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3571
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072877Metagenome / Metatranscriptome121N
F090002Metagenome108N
F102130Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1021241F090002GAGGVSPRVKPKADCASDAGGNVITVNKDCRLCCVSLAFNMPAGWYAMLVDWEA
Ga0208313_1021244F072877AGGAGGVIWVYIGSTIVWLLSLIFAVVASLKENDTLIVNLLAIIINSTLWATVMLNDGYPCWPPVAFALLVMVFAIELLIDLIMIAV
Ga0208313_1021249F102130N/ADVIDEPYFKWELYPWNPPPGGLSEDLYFFKKLIDKGIQPYADLQVTASHYLAPPVALKFDGTLYNTP
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