NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207817_1007666

Scaffold Ga0207817_1007666


Overview

Basic Information
Taxon OID3300026979 Open in IMG/M
Scaffold IDGa0207817_1007666 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046264Metagenome151Y
F078994Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0207817_10076662F046264N/AMTIYLSGISAAGRNIAEHSERPEAASTAESTALPSGISEIRRALPLHALR
Ga0207817_10076663F078994GAGMSVGQPIRISFLPEFEGEAVRYEDFFCRLVAEVSPPLIRCSRAPEQSAIPRPANPWNRLPAMPIKLNDSNSDAFSQVEKGVGT

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