NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209269_1008979

Scaffold Ga0209269_1008979


Overview

Basic Information
Taxon OID3300027051 Open in IMG/M
Scaffold IDGa0209269_1008979 Open in IMG/M
Source Dataset NameEnrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2858
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location
Location NameUSA: New Jersey, Arthur Kill intertidal strait
CoordinatesLat. (o)40.58Long. (o)-74.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088355Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209269_100897910F088355AGGAGMKNLTNKISVFAGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089793F088355N/AMKNMTNKIGVLVGRKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089795F088355AGGAMKNLSNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089796F088355N/AMKNLSNKINVFVGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089797F088355AGGAGMKNLNNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089798F088355AGGAGMKNLTNKVSVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.