Scaffold Ga0209281_1049579

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209281_1049579

Scaffold Ga0209281_1049579

Overview

Basic Information
Taxon OID	3300027111 Open in IMG/M
Scaffold ID	Ga0209281_1049579 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	675
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001430	Metagenome	696	Y
F038571	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209281_10495791	F038571	GGA	MKILPITFEIVTDECAENKILPIAFEIITDECAEKKVLPITFKIVTDKYAENKNLANYFLNSNRPMC
Ga0209281_10495792	F001430	N/A	MLKIKIFPITFEVVTDECAENKVLPITFKIVTDEYAENKNLVDYF

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