Sample 3300027111

Basic Information
IMG/M Taxon OID	3300027111 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114676 \| Gp0119671 \| Ga0209281
Sample Name	Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	234796731
Sequencing Scaffolds	59
Novel Protein Genes	92
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	57
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	1

Ecosystem Assignment (GOLD)
Name	Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	USA: California
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001430	Metagenome	696	Y
F007794	Metagenome	344	Y
F012754	Metagenome	277	Y
F021933	Metagenome	216	Y
F024731	Metagenome	204	Y
F038571	Metagenome	165	Y
F040493	Metagenome	161	N
F044940	Metagenome	153	Y
F067455	Metagenome	125	Y
F067456	Metagenome	125	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209281_1010709	Not Available	2086	Open in IMG/M
Ga0209281_1014974	Not Available	1628	Open in IMG/M
Ga0209281_1017412	Not Available	1458	Open in IMG/M
Ga0209281_1021610	Not Available	1242	Open in IMG/M
Ga0209281_1022987	Not Available	1188	Open in IMG/M
Ga0209281_1025162	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1112	Open in IMG/M
Ga0209281_1026238	Not Available	1079	Open in IMG/M
Ga0209281_1030013	Not Available	978	Open in IMG/M
Ga0209281_1031648	Not Available	942	Open in IMG/M
Ga0209281_1034492	Not Available	884	Open in IMG/M
Ga0209281_1035721	Not Available	863	Open in IMG/M
Ga0209281_1036805	Not Available	844	Open in IMG/M
Ga0209281_1039286	Not Available	804	Open in IMG/M
Ga0209281_1040136	Not Available	791	Open in IMG/M
Ga0209281_1040138	Not Available	791	Open in IMG/M
Ga0209281_1040295	Not Available	789	Open in IMG/M
Ga0209281_1041115	Not Available	777	Open in IMG/M
Ga0209281_1041863	Not Available	767	Open in IMG/M
Ga0209281_1041995	Not Available	765	Open in IMG/M
Ga0209281_1043100	Not Available	750	Open in IMG/M
Ga0209281_1043638	Not Available	743	Open in IMG/M
Ga0209281_1045719	Not Available	717	Open in IMG/M
Ga0209281_1047952	Not Available	692	Open in IMG/M
Ga0209281_1049359	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	677	Open in IMG/M
Ga0209281_1049579	Not Available	675	Open in IMG/M
Ga0209281_1049965	Not Available	671	Open in IMG/M
Ga0209281_1050065	Not Available	670	Open in IMG/M
Ga0209281_1051660	Not Available	654	Open in IMG/M
Ga0209281_1051994	Not Available	651	Open in IMG/M
Ga0209281_1052569	Not Available	646	Open in IMG/M
Ga0209281_1053186	Not Available	640	Open in IMG/M
Ga0209281_1054240	Not Available	630	Open in IMG/M
Ga0209281_1056329	Not Available	612	Open in IMG/M
Ga0209281_1056367	Not Available	612	Open in IMG/M
Ga0209281_1056497	Not Available	611	Open in IMG/M
Ga0209281_1056870	Not Available	608	Open in IMG/M
Ga0209281_1057110	Not Available	606	Open in IMG/M
Ga0209281_1059126	Not Available	590	Open in IMG/M
Ga0209281_1060419	Not Available	580	Open in IMG/M
Ga0209281_1062875	Not Available	562	Open in IMG/M
Ga0209281_1063084	Not Available	560	Open in IMG/M
Ga0209281_1063697	Not Available	556	Open in IMG/M
Ga0209281_1063698	Not Available	556	Open in IMG/M
Ga0209281_1064002	Not Available	554	Open in IMG/M
Ga0209281_1064276	Not Available	552	Open in IMG/M
Ga0209281_1064721	Not Available	549	Open in IMG/M
Ga0209281_1064730	Not Available	549	Open in IMG/M
Ga0209281_1064731	Not Available	549	Open in IMG/M
Ga0209281_1065924	Not Available	541	Open in IMG/M
Ga0209281_1066045	Not Available	540	Open in IMG/M
Ga0209281_1067422	Not Available	531	Open in IMG/M
Ga0209281_1068537	Not Available	524	Open in IMG/M
Ga0209281_1068875	Not Available	522	Open in IMG/M
Ga0209281_1069035	Not Available	521	Open in IMG/M
Ga0209281_1069380	Not Available	519	Open in IMG/M
Ga0209281_1070200	Not Available	514	Open in IMG/M
Ga0209281_1070545	Not Available	512	Open in IMG/M
Ga0209281_1072455	Not Available	501	Open in IMG/M
Ga0209281_1072456	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209281_1010709	Ga0209281_10107094	F001430	MLKIKILPITFEIVTDECAENKVLSITFEIVTDEYAENKNLADYFLNSKRRMCRK
Ga0209281_1014974	Ga0209281_10149741	F001430	MTNMLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1014974	Ga0209281_10149742	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTNKYAENKNLSDYF
Ga0209281_1014974	Ga0209281_10149743	F001430	MLKIKILPITIEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1017412	Ga0209281_10174121	F001430	ITFEIVTDECAENKVLPITFNIVTDKYAENNNLADYF
Ga0209281_1017412	Ga0209281_10174122	F001430	MLKIKILPINFELVTDDCAENKVLPITFVTVTDECAENKNLADYF
Ga0209281_1017412	Ga0209281_10174123	F001430	MLKIKILPITFEVVTDECAENKVLPITFKIVTDEYDENKNLVDYF
Ga0209281_1021610	Ga0209281_10216101	F001430	MLKIKILPITFEIVTDECAENKILPITFELVTDEYVENKNLVDYF
Ga0209281_1022987	Ga0209281_10229871	F001430	MLKLKILPITFEIGTDECAENIVLPINSKIVTDKYAKNKNLADYF
Ga0209281_1025162	Ga0209281_10251621	F021933	VEADYDPFWIGAAGPPGREGGCYFWFTIASEPASAQKDTSKVGLFDRGVLLIPYEAILRSICPSEKALEVRASVERSESYALGKRFAVAKLTASLSPRAKLRPLLLVTSGRLFRHP
Ga0209281_1026238	Ga0209281_10262381	F001430	MLKIKILPITFEIVTKEYAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1030013	Ga0209281_10300132	F067456	VVKKTIHMSITNHRGKDDNTTKIKLSNTNYRGKDDKTRKIKLSNTNYRGKDDNKTVYSRPPW
Ga0209281_1030013	Ga0209281_10300133	F067456	MVKMTIKEIKLSNTNYRGKDDDTRKINMSITNYCGKDDNTRMITLSNTNYHVKDDNTRNI
Ga0209281_1031648	Ga0209281_10316481	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYIENKNLVDYF
Ga0209281_1031648	Ga0209281_10316482	F001430	MLKIKILPITFEIVTDEFAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1031648	Ga0209281_10316483	F038571	MLKIKILPITFEIVTNEYAEHKVLPITFEIVTDEYIENKNLVDYFKTVTDKYAENKNLADYF
Ga0209281_1034492	Ga0209281_10344921	F001430	MLKIKILAITFEIVTDECAENKVLPISFEIVTDEYAENKNLADYF
Ga0209281_1034492	Ga0209281_10344922	F001430	MLKIKILPINFEIVTDECAENKVLPIAFEIVTDECDENKSYRLPLK
Ga0209281_1034492	Ga0209281_10344923	F001430	MLKIKILAITFKIVTDECAENKVLPISFEIVTDEYAENKNLADYF
Ga0209281_1035721	Ga0209281_10357211	F001430	MLKINILPITFKIVTNECTENKVLPITFDIVTDEYGENKNLADFF
Ga0209281_1036805	Ga0209281_10368052	F001430	MLKIKILPITFEIVTDECTENKVFPITFEIVTDKYAENKNLSEFFRNSNG
Ga0209281_1036805	Ga0209281_10368053	F001430	MLKIKIFPNSFEIVTDECAENKVLPITFEIVTEEYAENKNLADYF
Ga0209281_1036805	Ga0209281_10368054	F001430	MLKIKILPITFEIVTDECAENIVLPITFEIVTDEYAENKNLADYF
Ga0209281_1036805	Ga0209281_10368055	F001430	MLKIKIFPITFEMVTDECAENKVLPITFEIVTDEYAENKNLAD
Ga0209281_1039021	Ga0209281_10390211	F007794	YKGGECKFYFSREEIVYFNIRGEGSVFQASLRGGECNLLFFLTQVFSI
Ga0209281_1039286	Ga0209281_10392862	F001430	MNMLKIKILLITFVIVTDECAENKVLPITFEIVTDGYAENKNLADYF
Ga0209281_1039286	Ga0209281_10392863	F038571	LPITFEIVTDECAENKVLPITFELVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1039286	Ga0209281_10392864	F038571	LPITFEIVTDECAENKILPIAFEILTDECAENKVLPITFKIVTDKYAQNKNLADYF
Ga0209281_1040136	Ga0209281_10401361	F001430	MLKIKILPINFEIVTDECAENKVLPIAFEIVTDEYVENKNLVDYF
Ga0209281_1040138	Ga0209281_10401381	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVNDEYVENKNLVDYF
Ga0209281_1040295	Ga0209281_10402952	F001430	MLKIKILPINFEIVTDECAENKVFPIAFEILNDEYVENKNLVDYF
Ga0209281_1040295	Ga0209281_10402953	F001430	MPITFKIVTNECTENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1041115	Ga0209281_10411152	F038571	MLKIKIFPITFEIVTDEYAEKKILPITFEIVTDECAENKVMPLTFKIVTDKYAENKNLGDYF
Ga0209281_1041863	Ga0209281_10418632	F001430	MNLLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVENKNLV
Ga0209281_1041995	Ga0209281_10419952	F001430	MLKIKVLPITFEIVTNKCAQNKVLPITFEIVTDEYVENKNLVDYI
Ga0209281_1043100	Ga0209281_10431001	F001430	MLEIKILPINFKKVTNECAENNVLPITFEIVNDEYAENKNLADYF
Ga0209281_1043100	Ga0209281_10431003	F038571	MLKIKILPITFEIVTDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1043638	Ga0209281_10436381	F040493	PNMLKSEFLDAELLAITSEVQRLVEQRRSPTLHLVYQEQWDSLQTRASNLLSFLSQKCNKIHEAAAMHILSLVHSVEEDQDNMLLTDTPFFQKSEYFSRERRLLKQYRQSAQKIREEHKAREEELLQKQLALEAAMKEKDDLIARLMNPQPQP
Ga0209281_1045719	Ga0209281_10457193	F001430	MLKIKILPITFEIVTDECAENKVLPLTFKIVTDKYAENKNLADYF
Ga0209281_1047952	Ga0209281_10479521	F001430	MLKIKILPITFEIVTNEYVENKVLPITFEIVTDEYVLKINLADYF
Ga0209281_1047952	Ga0209281_10479522	F001430	MPITFEIVTENMLKIKILSITYKAVTDKYAEIIILPITFEIVTDEYAENKNLADYF
Ga0209281_1047952	Ga0209281_10479523	F001430	MLKIKILPITFEIVTDEFPENKVLPITFEIVIDEYVENKNLVDYF
Ga0209281_1049359	Ga0209281_10493591	F044940	MALRTLFKSEGTEKEGEEKNSSSTQAKRGRREKSSLTTQENFWCVLKCGM
Ga0209281_1049579	Ga0209281_10495791	F038571	MKILPITFEIVTDECAENKILPIAFEIITDECAEKKVLPITFKIVTDKYAENKNLANYFLNSNRPMC
Ga0209281_1049579	Ga0209281_10495792	F001430	MLKIKIFPITFEVVTDECAENKVLPITFKIVTDEYAENKNLVDYF
Ga0209281_1049965	Ga0209281_10499651	F001430	NMLKIKILPITFEIVTDESAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1049965	Ga0209281_10499652	F001430	MLKIKILPITFEIVTDEYAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1050065	Ga0209281_10500651	F001430	NKVLPITFEIVTDECAENKVLPITFKIVTDKYAKNKNLADYF
Ga0209281_1051660	Ga0209281_10516601	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVLKINLVDYF
Ga0209281_1051994	Ga0209281_10519941	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVENK
Ga0209281_1052569	Ga0209281_10525691	F001430	MLKIKILPITFEIVTDECAENKVLPSTFEIVTDEYVENKNLVDYF
Ga0209281_1052569	Ga0209281_10525692	F001430	MLKIKILSITFEIVTNEYAENKVLPITFEIVTDKYVENKNLVDYF
Ga0209281_1053186	Ga0209281_10531861	F012754	IERMLAERKREQEAIKAARDEKLQSIGIDPSDDYFMEKLAEVKQLAESAQKQVVKEAAEMLKQIPEASEAVTYVDASESASIASIPEAPVQVTQPSNLPLIIPSPVPLSNDSDIDDVPISQRMRKLSKPSPKPQQTTPQLQLQAEQSSAAAECTEDPEEPLTSNLPQCDSPSNLFSLERHLGGEITKTPEKATKSVPQKIELVHQSEPVAET
Ga0209281_1054240	Ga0209281_10542401	F012754	RMAKEHTDKLLADKKQKEAEYLASRDAKIQSLGLENYDEYFVQKIAEVRQIAGLVEQQVVEEAAEMLEQIPEASVADTSVAASESASIALISEASAQVIQISNLPLIIPSPVSPSNDSDLDDVPIGQRMRKLSKPSPQPQQTTPQLPLQAEQSSAATECTEDPEDPPTFDLPQCDSPSNLFSLERHLGGEITKTPEKATKSVPQKIELV
Ga0209281_1056329	Ga0209281_10563291	F001430	MNMLEIKILPITFKKVTNECAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1056367	Ga0209281_10563671	F001430	MNMLKIKIFPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1056367	Ga0209281_10563672	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYAENKNLSDYFRNSN
Ga0209281_1056497	Ga0209281_10564971	F001430	MLKIKILPITFEIVTDECTENKVLPITFEIVTDKYAENKNLSDYFRNSN
Ga0209281_1056497	Ga0209281_10564972	F001430	MLKIKIFPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1056497	Ga0209281_10564973	F001430	MLKIKILPITFEIVTDQCTENKVLPITFEIVTDKYAENKNLSDYF
Ga0209281_1056870	Ga0209281_10568701	F001430	MLKIKILPITLEIVTDEYVENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1057110	Ga0209281_10571102	F038571	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKVLPITFEI
Ga0209281_1059126	Ga0209281_10591261	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEILNDEYVENKNLVDYF
Ga0209281_1060419	Ga0209281_10604193	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVL
Ga0209281_1062732	Ga0209281_10627321	F067455	MIFGQNLINDSCRQVEKTQGQIVGTKMGSTAGNDQNTLLCDFMQKMME
Ga0209281_1062875	Ga0209281_10628752	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDEYAENKNLVDYF
Ga0209281_1063084	Ga0209281_10630841	F001430	LKIKILPITFEIVTDECTENKVFPITFEIVTDKYAENKNLSEYFRNSNG
Ga0209281_1063084	Ga0209281_10630842	F001430	MLKIKIFPNTFEIVTDECAENKVLPITFEIVTEEYAENKNLADYF
Ga0209281_1063697	Ga0209281_10636972	F038571	MLKIKILPITFEIVTDECAENKILSIAFEILTDECAENKVLPITFKIVTDLLLK
Ga0209281_1063697	Ga0209281_10636973	F001430	TFVIVTDEYAEKKILPNTFEIVTDECAENKNLVDYF
Ga0209281_1063698	Ga0209281_10636981	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVEN
Ga0209281_1064002	Ga0209281_10640021	F038571	MLKIKILPISFEIVTDECAENKVLSITFKIVTDKYAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1064002	Ga0209281_10640022	F001430	MLEIKILPITFKKVTNECAENKVMPITFEIVTDEYVENKNLAD
Ga0209281_1064276	Ga0209281_10642761	F024731	MGSLNLSLDAKHDMXTYLVSYSVKXKYWNVPCRENEILTYMVTSLINMKVELVPXFKTRYLNLFGFKFAKMKVLKXPLSRSMINGKFEHVPXRPVLQTXYVNLFGFVFGKMKVLDXPVSRKXDFGLYAYKFDKXDIXTCPLIXNIICEPIWFCIP
Ga0209281_1064721	Ga0209281_10647213	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDKYAENKNL
Ga0209281_1064730	Ga0209281_10647303	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDEYAENKNLGDYF
Ga0209281_1064731	Ga0209281_10647311	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVLRINLADYF
Ga0209281_1065462	Ga0209281_10654621	F038571	MLKIKIFPITFEIVTDECAENKVLPITFEIVTDECVENKVLPITSKIVTDKYAKNKNLADYF
Ga0209281_1065924	Ga0209281_10659241	F001430	MLKIKILPITFEIVTDEYAENKILPIAFEIITDECAENKVL
Ga0209281_1065924	Ga0209281_10659243	F001430	MLKIKILPITFEIVTDECAENKVLSIAYEIVTDEYVENKNLVDYF
Ga0209281_1065925	Ga0209281_10659251	F038571	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYIENKNLVDYFKTVTDKYAENKNLADYF
Ga0209281_1066045	Ga0209281_10660452	F001430	MLEIKILPITFKKVTNECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1067422	Ga0209281_10674222	F001430	MVKIKILPITFKIVTDECAENKVLTITFEIVTDEYAENKSCRLPLK
Ga0209281_1068537	Ga0209281_10685371	F001430	MLEIKILPISYEIVTDECAENKVLSITFEILTDEYVENKNLVD
Ga0209281_1068875	Ga0209281_10688751	F038571	MQKIKILPIAFEIITDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1069035	Ga0209281_10690352	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYL
Ga0209281_1069380	Ga0209281_10693801	F038571	MLKINILPISFEIVTDECAENKVLPITFKIVTNECTENKVLPITFDIVTDEYAENKNLADYF
Ga0209281_1070200	Ga0209281_10702002	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1070545	Ga0209281_10705451	F001430	NMLKIKILPITFEIVTDKCAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1072455	Ga0209281_10724551	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENRNLVDYF
Ga0209281_1072456	Ga0209281_10724561	F001430	MLKIKILPITFEIVTNECAENKVLPITFGIVTDEYVENKNLVDLLLI
Ga0209281_1072456	Ga0209281_10724562	F001430	MLKIKILPITFKIVTNECTENKVLLITFEIVTDEYVENKNLVDYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027111: Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences