NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256794_1106140

Scaffold Ga0256794_1106140


Overview

Basic Information
Taxon OID3300027274 Open in IMG/M
Scaffold IDGa0256794_1106140 Open in IMG/M
Source Dataset NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0945-MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089626Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0256794_11061402F089626GGAGVVVDNLDVRTIVSDLAFFLKSGVISLGELGEAILAGDDDLLSTGELEFTSSESFNSVGDVLFSKSDGVEDLVDLDSGDLTGGFTEGVSHTSLKSIGTSA
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