Basic Information | |
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Taxon OID | 3300027283 Open in IMG/M |
Scaffold ID | Ga0209643_1000039 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 381070 |
Total Scaffold Genes | 382 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 281 (73.56%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Surbsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic |
Source Dataset Sampling Location | ||||||||
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Location Name | Mt. Terri, Switzerland | |||||||
Coordinates | Lat. (o) | 47.379 | Long. (o) | 7.1648 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025775 | Metagenome | 200 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209643_100003981 | F025775 | GGAG | MKQLFTFQGFPMVVVVALVVWSWISILSVLIAAFF |
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