 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027370 Open in IMG/M |
| Scaffold ID | Ga0209010_1000001 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 318654 |
| Total Scaffold Genes | 277 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 199 (71.84%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013661 | Metagenome / Metatranscriptome | 269 | Y |
| F035853 | Metagenome / Metatranscriptome | 171 | Y |
| F055897 | Metagenome / Metatranscriptome | 138 | Y |
| F099789 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209010_1000001128 | F099789 | GAG | MLRLAGALEQGNLVEVAFQTESGAVKGMAEILQPTRKSKDEIMQPFRFIALEDDDQRTLRSALDSRVDKDFLGLRSSQWVAPKRK |
| Ga0209010_100000117 | F013661 | GGAG | MSKEALNEILSIAIFQPLPGHEEASLTTMRALIAALSSGGYSRDLLYRDAKSHNEYILLRYWKSETARRAALEDPEVLRCWAKLSHEIRTLKIYETLEDAITP |
| Ga0209010_1000001206 | F035853 | GGAGG | MYTGNLIDELISTVERAEKHVRVAADSQETKLPYWYVATERERAFDSKLLGVA |
| Ga0209010_100000155 | F055897 | GAGG | MRIAVRFWLWCLTTVLLGVCASGFAFGGSKLHYLVTNDDEVLPSDVTATFYVVGADGLLTMKGQVFTNRSGIAGGYFGANRVTVLDSENAECVYDSQAVTGEIAGIVVKTLKVGGSVVGSKRDTGASNGIGLAMNSKYLYASFTDHSTIGTFQVLPGCKLKFVKDIDVEGLQQGTIDGMVIHGDIMVVTYGDDSIESFNISGGVPVSNGDEQNSTGSGGSTYPTAVDITQDGHYALFGDTSTSTIVEVSDISSGKLTPTVVYPLGNGINSSNILLSPDETLLYISNNQSGTITAAFFDASTGKLSKGCISGVLKGYVVDWSYTASMALEETTGTGRMLYVAEYGNPSSIGEISVTSAVRKCALEELPKSPVSDPNSPGLLSIGAFPPRPF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |