NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209010_1000002

Scaffold Ga0209010_1000002


Overview

Basic Information
Taxon OID3300027370 Open in IMG/M
Scaffold IDGa0209010_1000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251966
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (83.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011954Metagenome / Metatranscriptome285Y
F023657Metagenome / Metatranscriptome209Y
F059481Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209010_1000002128F023657GGAGGMATSANLPLRAWGWRELYVAALMEPQNDRISARIADAERVILERARELFKASGDNIQEEEALDDALYALRALKTCLEIHGGFATAA
Ga0209010_100000243F059481AGGAGGMATGAVTAREPEADAKTATTEAPEAKPLTLKQRFFHLLHDIFKGREEHLGWRQ
Ga0209010_100000246F011954GGAGGMDRRTINRILILGTLLASVVIGANVAAQTAIHPTTGGIGQTQTSRTAQNHAAAEQNPACERIINECKNLGFIVGQWKKDNGLWKDCFDPVVKGGGSATRDGKPISVPVSASDVQSCRAAEGHRTVATSAH
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