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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027370 Open in IMG/M |
| Scaffold ID | Ga0209010_1000007 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 230472 |
| Total Scaffold Genes | 227 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 179 (78.85%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000078 | Metagenome / Metatranscriptome | 2550 | Y |
| F000309 | Metagenome / Metatranscriptome | 1327 | Y |
| F004586 | Metagenome / Metatranscriptome | 432 | Y |
| F016469 | Metagenome / Metatranscriptome | 247 | Y |
| F057545 | Metagenome / Metatranscriptome | 136 | Y |
| F083009 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209010_1000007139 | F004586 | AGGAG | MTTSEKSKCAHLPCRCLVQSSDKYCGEACKEAGSKEVEIACQCDHGSCPLTA |
| Ga0209010_1000007143 | F016469 | AGGA | VRYYTTKPMNGGTTFTCTFCEHSVTTNDFDVTNGNRRTQAAALINQHAASLHLRTSVPTKLGSRGAL |
| Ga0209010_1000007151 | F057545 | GGAGG | MSREDLMKPDLLSEIVLLGSAAVIVVVLLLIVVAALTQPTALA |
| Ga0209010_1000007155 | F000309 | AGGTGG | MELDSVRPNQDQTLERILESAVVVSWLDLMHGAQTGLIHIEYAFATGGTLDYLKLWSSISPGHWLLACEYWMTSSTFHDRGVHFDNGYQSQGLSDILESIMQHQNRFTLPTDFGRQGLLQIPSPTEKDSAAAAASVSQAIGHLGSALAEPALA |
| Ga0209010_1000007184 | F000078 | AGGAGG | LENLYCLRCNRELEAGHKSVAVYMFAQTVGIKPRQKSAAQRICFCPQCSVSLAMGPPPEGALNIAAWNMIRDLVGSDPALNEAAWENLRGIVGLLPATGTDGGSRRASSGGYFEF |
| Ga0209010_1000007216 | F083009 | AGGGGG | MASEPCQHSNRVSGLVRLDFARQDAPEGPMYSGAVSASVCEDCGHIELYAKIHHLLCDWLGQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |