NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209418_1014741

Scaffold Ga0209418_1014741


Overview

Basic Information
Taxon OID3300027371 Open in IMG/M
Scaffold IDGa0209418_1014741 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1267
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001891Metagenome / Metatranscriptome622Y
F026495Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0209418_10147411F001891GGAGMRAIGLVLLSIAIMALLLTDADAKRRSSAQGSQAAGASGSWCAVHPRHGSENCGYTSFDQCWATIGAEGGWCRPNPFSATPYGTGYTWSGP
Ga0209418_10147414F026495N/AVFGVAAASRNTRFQAARYSLTWAGLAPADRASFAWRLPSFDHLVG

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