NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207981_1002450

Scaffold Ga0207981_1002450


Overview

Basic Information
Taxon OID3300027560 Open in IMG/M
Scaffold IDGa0207981_1002450 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3324
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044475Metagenome / Metatranscriptome154Y
F090480Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207981_10024505F090480N/AMNKIIACIVLAVVSGFSFTVARAMPLAPIWTEQAGLTIPVADGCGFNRYRDARGICRKKYVITRHRGPQPFYTGCGGLNSHRVCNLYGHCWMVCD
Ga0207981_10024507F044475GGAGMRMPLLAYFLVMGIILFSGLILVSSQLESKSLPVSQRIGVPPPFKAQPDANGSPAGTVNSTVE

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