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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027586 Open in IMG/M |
| Scaffold ID | Ga0208966_1000092 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27611 |
| Total Scaffold Genes | 73 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (68.49%) |
| Novel Protein Genes | 14 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Associated Families | 14 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003965 | Metagenome / Metatranscriptome | 459 | Y |
| F006385 | Metagenome / Metatranscriptome | 374 | Y |
| F007691 | Metagenome / Metatranscriptome | 346 | Y |
| F009531 | Metagenome / Metatranscriptome | 316 | Y |
| F018929 | Metagenome / Metatranscriptome | 232 | Y |
| F022197 | Metagenome / Metatranscriptome | 215 | Y |
| F024314 | Metagenome / Metatranscriptome | 206 | Y |
| F027847 | Metagenome / Metatranscriptome | 193 | Y |
| F031101 | Metagenome | 183 | Y |
| F034575 | Metagenome / Metatranscriptome | 174 | N |
| F038479 | Metagenome / Metatranscriptome | 166 | Y |
| F056558 | Metagenome / Metatranscriptome | 137 | Y |
| F084234 | Metagenome / Metatranscriptome | 112 | Y |
| F095473 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208966_100009216 | F024314 | N/A | MNEDQKLTPEQAQVILLFQIEQKLRFVIAKQVEEKFHGSYHNASHDIAQFIRNMA |
| Ga0208966_100009217 | F056558 | N/A | MGILDNLENAWDGNFEFESKPMVNSDAMGKEIFWQDLGRPEEDQSLAVKLFSETCCTDCSCKNE |
| Ga0208966_100009218 | F084234 | AGGAG | MFDWFTNPFSVLFDWIGYFLIFGAVVTMILVIGAVVAIPLGLKLLGVAFAKTIVVETSKVIKDLGIANIDLKQQKETKQMKAYLDRKVVPILSKIS |
| Ga0208966_100009219 | F095473 | N/A | MTCQVINCDSTELVYSGTDAFMLGINTETYCYNCANAYAQINRVMSKVRQDYLDSLTPVSSLTTSD |
| Ga0208966_100009220 | F038479 | AGGTGG | MTTLTLEQKINKAAQLVAEGKVVSFRGASPATYIEVMRLANRIKQDAEFPQCPCEECI |
| Ga0208966_100009221 | F027847 | GGA | MNPFTALQDFLDENVAYGIIGAFIGVGISVALCFILGA |
| Ga0208966_100009222 | F003965 | AGGA | MNSNVIIKCVEHTPNKPAISNVADEQFTFCEICENNIERWYNDTDPERLPMWTDWKVSK |
| Ga0208966_100009229 | F006385 | AGG | MILDNGTLIAIVIALGGSLTVMCLFWKQNIAQQKEIRRLQVTLRTERLLK |
| Ga0208966_100009243 | F009531 | AGG | MTKQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTGSDFKTAGEALNWVLDRYPDEMLELVVTSLPAYEKEYV |
| Ga0208966_100009244 | F022197 | N/A | MLQDYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHSK |
| Ga0208966_100009245 | F007691 | GAG | VNTIDDLINEIYESNFSHLEFEENMGGTDCDCHIHITLNTMAKYAGIEVG |
| Ga0208966_100009248 | F034575 | GGAGG | MENNTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIEVEEYSEDAMDSMARTEATGYFDALCEVYALTYAIAFAKEDVKNRKEILGG |
| Ga0208966_100009256 | F031101 | GGA | MNELFWYSRQLKEAVSTTAMENGWNDAKCKEVFDELMEKYLVSKDLK |
| Ga0208966_100009260 | F018929 | GAG | MNNEEIAALLDKESYRVWDTAKVIKNQDYHDGLVKGLKMAAKYVAKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |