NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1009801

Scaffold Ga0208974_1009801


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1009801 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3141
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011646Metagenome / Metatranscriptome288Y
F022400Metagenome214Y
F029021Metagenome189Y
F034906Metagenome173Y
F072283Metagenome / Metatranscriptome121N
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10098012F022400AGGMRKTAIERSQRPTLRLVSGGREESGPALSLFGPLKVGLITMQKTNEDQVLTELLNSLERKIVELSIRSCEVLNIFLSDTEHLAKQKVSFSSIDIINE
Ga0208974_10098013F034906AGGTGGMKNTHRVKAAADQAVRQRNYRRARERALTRLANDYPSLYRSYLEEEKKADEKMGKKWLDIDGNTKPTVSGSR
Ga0208974_10098014F011646GGAGGMSNVLELRNGSVKRIIFYEVSDGQNIAIWGGESALEALKWYRNSPTGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV
Ga0208974_10098016F103146AGGAGMAEPRYLMGDDYALNGVEGEEEEIGDAGLPDRMWEDED
Ga0208974_10098017F029021GAGGMNICQFCGWEIARVDWYHRYNNKLICDNCVMDTMSEREKERSNG
Ga0208974_10098019F072283AGGMQTMQDLIEAIKPILPNALVIDTDSGILIETNLELGLGGLLQTIEREGE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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