NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208951_1000004

Scaffold Ga0208951_1000004


Overview

Basic Information
Taxon OID3300027621 Open in IMG/M
Scaffold IDGa0208951_1000004 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115112
Total Scaffold Genes183 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (73.77%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Associated Families18

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001043Metagenome / Metatranscriptome794Y
F001176Metagenome / Metatranscriptome756Y
F003408Metagenome / Metatranscriptome488Y
F003422Metagenome / Metatranscriptome487Y
F007921Metagenome / Metatranscriptome342Y
F013888Metagenome / Metatranscriptome267Y
F014140Metagenome / Metatranscriptome265Y
F030758Metagenome / Metatranscriptome184Y
F037095Metagenome / Metatranscriptome168Y
F038246Metagenome166Y
F038675Metagenome / Metatranscriptome165Y
F066789Metagenome / Metatranscriptome126Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208951_1000004119F003422N/AMTKYQKYTWVCTGDCDALIEYTYKDGFGWPNGVMQITCPCNSTCTLLSVEDATIPYTDTQLPTKEETMEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNRISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQNGNIEITDTEVCNVREN
Ga0208951_1000004121F001043AGAAGMFLNSNQQDTRGVKLSDYKEGFQDGYKFAREELMEKLREIDIRDIDSWLLNQLADMIEGNDL
Ga0208951_100000413F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYEKLVVCPTTFSNIIEYKRIWTALGHRPEGSVRKHFSEYVQQIVEKTIVLENNNE
Ga0208951_1000004135F066789GGAGGMSDAICSKYGCDYQLDLDGQVTCGNCGAMDDDMPNPTNVDNLAFESQVDFE
Ga0208951_1000004137F038246AGGAMGILDNFEAYLEAEDQETDKCHYCQALAIYNDLAEVEQNYQVVGVCACHAFKGLSS
Ga0208951_1000004143F007921AGGCGGMIDWLINRIFRWDTLRHAIFDEVRLYQSVDRSMWEYEKEGPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNKSLIGLWEDQWLAEADKNGTM
Ga0208951_1000004159F001176GGGGGMSENGTGMASPSNSEPSGAVTSREATAKSPSQGKFRSGMNNPKPKIDTNKHGIRRETSLAPKKVGRKKI
Ga0208951_100000416F000369AGAAGMVEIELAQHFDRMNKVVEELLKGNSATQIATITGFSRKEVVEFIDEWKSVVHNDSSLRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKAGALKLIADIEGKRIGMLQDVGVLENNELASQVAEAERKQEVLVKILKEVTSTCPKCKMEVAKRLSQITGIVESIIIDAEEVV
Ga0208951_1000004173F077310N/AMNVSTSQIILAILASILSGFGTALYGSIREKKREAFRAQEKIQIDLKLELKDLEIKLYQLEKDLNEWKDKYYEAIQELIAVRAELEDTLIKLTHIQIHLNEG
Ga0208951_1000004174F000671GAGGMEKILCYSCNKNKNQLNLKKSSLLPINLLICETCISSRFEPRWVVILAGRQMGSEYVKEFVVKKRYVGNEISASELLV
Ga0208951_1000004177F000473N/AMFIDKNKNHFKHGINQWTGEPNKPVFYTKEMAQKVREIKKPVFDLLMDIIRYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKKLIESYGVRCELEGAPSERVL
Ga0208951_100000418F013888GGAGMSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLIGMPDTYIHGSKKNIYREMTNTPGDLVLGTWDCSEDLRGRVGQVLLSGDKVLSSMDKTYSCEYPHMWGTMLFRKNLIRYIDVDLEHPGKQIQEWIDMNLDVRAARTGGKYMDIGTLKGLKQLYKEME
Ga0208951_1000004180F014140N/AMNTYKVKLDVEIEVEAFNQEDASEYVHDIFNLDDEIKKVSIVKISQK
Ga0208951_100000420F038675AGGMKLYQSKEWLYRRYVVQKKTVTEIGKECQVSAMTIQRYLEQFGLIKKR
Ga0208951_100000454F003408AGAAGMPELIQTLQSMNKREEKERKFLAGLQGVNLDSTEEKEGPSFEDIRRRALGITASGDDVVSLQGAIATETGFGINAGLGYEVG
Ga0208951_100000457F000258GGAGGMTANYKIDAMTELRKFLWNQLKEYSIFDPEEYYSDNLGKEIIPILPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWAVCCEQILFTIYSVDVTDINEIRNFMTDEFRRMDDSAKDVRLSGLVSDKIKFFSIYVADISPTSPSEELQGFLSADVVLEIKYSRILDNSGRFI
Ga0208951_100000477F030758GGAMATVDKNFRVKNGLNVAGPATFSSNVVLGTTPLRFDTVTNKLQLELNGTWVPIAFNSEIPDTTQAISFMDIGLAIDYDGQPTYIIQANGVTPSGSSKYADGGSPTSTSWDMYFDSGEI
Ga0208951_100000484F037095GGAGMAKFNKSDLNKDGKIQMTEQILAALGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAVAPVILKALSPSNKDFGFTNEAK
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