NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209828_1103802

Scaffold Ga0209828_1103802


Overview

Basic Information
Taxon OID3300027623 Open in IMG/M
Scaffold IDGa0209828_1103802 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024246Metagenome206Y
F100272Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209828_11038021F100272N/AMASPPDIPKSGAIASGMPAGTSAVTPAGAATGGSAAGSEIPFTPPRPLADLVGETVRRVPPGVDAFLPRRHDERTGLVDQDRDPATPLAMADLDTALSTFRESLLADVSR
Ga0209828_11038022F024246N/AHTYTQAQATQPLLRGPPSPIPTAFQQRLDSVGGGAFPQWFSQPPYYLLELFALEGFIGLAHLGWLLWSPAFGFGRGLLRVRTPSPSPFDKTNCALDYDSLLGFAVILSSGWGKAGLWVDFRGSSFDGPS
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