NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000018

Scaffold Ga0209118_1000018


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000018 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)134369
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (83.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F000174Metagenome / Metatranscriptome1764Y
F004611Metagenome / Metatranscriptome431Y
F010853Metagenome / Metatranscriptome298Y
F065983Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100001810F010853AGGAGMLQCSIICNMTKSPFSKKEQIMTSTSKSTKKAAAAVNPEFVDSFSPLVLNSVERVADMQKKTLDITAEQTAEWIGSWKKALSYFPVTPLAFIFDVAGQAVQTAIETQKSAVDLVVEQSKAATGIAKVRAEAYSKIADGVTTTMQKSVERSMEAQKTILEFVSEQNKAVFESTKKQFGATAGPATVIVDRFQRGAHAVIEAQKSFLNIVSQPFATAKS
Ga0209118_100001813F065983GAGMKKKRLTAQQVRTQKRRRAHNRKHTLLRRECYKWLRKNLPDVYAKLRKKAGLVRTGRPKG
Ga0209118_100001828F004611GGAGMAEGCGRFETGVKPLYKCGEAIFVPESRPNSRRWTVIASGLLCCGLGVVVMYTRRSAFVSPLAVVVVAAIGLAAVLLQLRYYNREHSNPVHAPVWLNMVGVLFALTALLSDLLGLSSQMAQVMALGAVGSFAISGGLILHAFRKQRTTSK
Ga0209118_100001830F000174GAGGMKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKDSMLEASSNKPTLATPTTAQQPIRIPQAAVNASPQPARAAGWEDTAKRWP
Ga0209118_100001833F000151GGAGGMQYGANGSNGTGNGTLLRNEDSHVQEVVKTAHEELRHLMRQRAEIMKRIGTLKQTISGLANLFGDDILGDDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEALSLVRENGRRAWQWVSDPAPVERASAASAPLSQL
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